Improved alignment with CE-MC algorithm.

 
			   10        20        30        40        50  
1CDKA  (  27 )    lkkwenpaqntahld--qFeriktlgtgsf----grvmlVkhketgnhfa
1A6O   (  23 )    ywdyealtvqwgeqd--dyevvrkvgrgky----sevfeGinvnnnekCi
1HCK   (   1 )                 me--nFqkvekigegty----GvvykArnkltgevVa
1BLXA  (  12 )                     qyecvae--igeg-ayGkvfkArDl-knggrfV
1JNK   ( 110 )                                                      
3ERK   (  26 )                         lsyigegay----gmvcsaydnlnkvrVa
1BMKA  (  19 )                 evperYqnlspvgsgay----GsvcaAfDtktghrVa
1KOBA  (  43 )           evkqgsvydyYdIleelgsg-af----gvvhrCvekatgrvFv
1TKIA  (  20 )                Lye--kYmiaedlg----rgefgivhrCvetsskktym
1PHK   (  15 )                Fye--nYepkeilgrgvs----svvrrCihkptckeya
1A06   (  16 )                Ird--iYdfrdvlgtgaf----sevilAedkrtqklVa
				    bbbbbbbbb        bbbbbbb     bbb

			   60        70        80        90        100 
1CDKA  (  71 )    MkiLd---k--------qk-VvklkqiehtlnEkrILqaVn-fpfLVkLe
1A6O   (  67 )    IkiLk------------pv------kkkkikrEIkILqnLc-ggpnIVkL
1HCK   (  32 )    Lkkir               tegvpstAire--Isllkeln-hpnIVkLl
1BLXA  (  41 )    alkrV---rV-------qtgeegmplstireVavLrhLetfehpNVVrLf
1JNK   ( 110 )                                   relvlMkcvn-hkNIIsLl
3ERK   (  51 )    ikkIs---P--------fe-hq--tycqrtlreikiLlrFr-heNIIgIn
1BMKA  (  52 )    Vkkls------------rP-fqsiihakrtyrelrllkhMk-henVigll
1KOBA  (  81 )    Akfin---T--------py-pl---dkytvkneIsIMnqLh-hpkLinLh
1TKIA  (  52 )    AkfV-------------kv-kgtdQvlv--kkeisiLniAr-hrNIlhLh
1PHK   (  47 )    VkiIdVtgg-gsfsaeevqel-----reaTlkEVdILrkVsghpnIIqLk
1A06   (  48 )    Ikcia---k                     eneiavlhkIk-hpnIvaLd
		  bbbb                      aaaaaaaaaaaaa         bb

			   110       120       130       140       150 
1CDKA  ( 108 )    ysF-kdn------snlYMVmeyVpggeMfshLrrig---rFsephArfyA
1A6O   (  98 )    ldiVrdqhs----ktpSLIfeyVnntdfkvLy--p----tLtdydIryYI
1HCK   (  68 )    dvi-hte------nkLyLVfefL-hqdLkkfmdasa-ltgIplplIksYL
1BLXA  (  81 )    dvc-tvsrtdre-tkLtLVfehvd-qdLttyLdkvp-epgVptetIkdMM
1JNK   ( 128 )    nvftpqktleefq--dvylvmelMdanLcqviq-m----eLdHerMSyLL
3ERK   (  86 )    dii-raptieqm-kdvyivqdlM-etdLyklLktqh----LsndhIcyFL
1BMKA  (  88 )    dvf-tparsleefndVyLVthlm-gadLnniVk-cq---kltddhVQfLI
1KOBA  ( 115 )    dAF-edk------yeMVLIlefLsGgeLfdriaaedy--kmseaeVInYM
1TKIA  (  85 )    esf-esm------eeLvMIfefIsGldIferintsaf--elnereIvsYV
1PHK   (  91 )    dty-etn------tfFFLVfdlMkkgeLfdyltekv---tLsekeTrkiM
1A06   (  83 )    diy-esg------ghlyLImqlvsGgeLfdrivekg---fyterdAsrlI
		  bbb b          bbbbb       aaaaa          aaaaaaaa

			   160       170       180       190       200 
1CDKA  ( 148 )    aQIVlTFeyLhsldLIYRdLkPenLlidq---qgyIqVtdFgfAkrvkgr
1A6O   ( 138 )    yeLLkALdyChsqgIMHRdVkPhNVmIdhe--lrkLrLidWglAEFyhpg
1HCK   ( 109 )    fqLLqGLafChshrvlHrdLkPqnLlInt--egaIkLadFGLArAfgvpv
1BLXA  ( 127 )    fqLLrGLdfLhshrvvHrdLkPqNIlVts---sgqIkLadfglariysfq
1JNK   ( 171 )    yQMLcGIkhLHsagiiHrdLkPsnIvvks---dctLkIldFGla------
3ERK   ( 129 )    yQILrGLkyIHsanvLHRdLkPsnLlLnt---tcdLkIcdFGlArvAdpd
1BMKA  ( 132 )    yQILrGLkyIhsadiiHrdLkPsNLAVne---dceLkIldFglarhtdde
1KOBA  ( 156 )    rqACeGLkhMHehsIvHLdIkpeNImCetkk-assVkIidFglAtklnpd
1TKIA  ( 126 )    hqVCeALqfLhshnIGHFDIrPenIiYqtrr-sstIKIieFgqArqlkpg
1PHK   ( 131 )    raLLeVIcaLhklnIVHrdLkPenIlLdd---dmnIkLtdFgfScqLdpg
1A06   ( 123 )    fQVLdAVkyLHdlgivHrdLkPenLlYysldedskIMIsdf---------
		  aaaaaaaaaaaa         333bbb        bbb            

			   210       220       230       240       250 
1CDKA  ( 195 )    -----------T-w-------tl--cgtpeyLAPEIils-------kGYn
1A6O   ( 186 )    ---------keY-n-------vr--VAsryFkGPELLVd------lqdYd
1HCK   ( 157 )    -------------r------tythevvtlwyrAPEiLLg------ckyys
1BLXA  ( 174 )    malt-----------------s---vvvtlwyrAPEvLLq------ssya
1JNK   ( 217 )    ----          sf----mmtpyvvtryyrAPEvIlg-------mgyk
3ERK   ( 176 )    -----------h-d--htgf-lteyvatrwyrAPeIMLn------SkGyt
1BMKA  ( 179 )    ---------------------mtgyvatRwYrAPEiMln-----W-mhyn
1KOBA  ( 205 )    -----------e-i-------vkvttatAeFaAPEivdr-------epvg
1TKIA  ( 175 )    -----------d-n-------frLlftapeyYAPEvHqh-------dvvs
1PHK   ( 178 )    ---------ekl-r-------ev--cgtpSylAPEIIeCsmndnh-pGYG
1A06   ( 182 )                                pgyvAPevlaq-------kpys
						   aaaa             

			   260       270       280       290       300 
1CDKA  ( 217 )    kAVDWWaLGVLIYEMAAGypPFfadqpiqIyekIvsgk------------
1A6O   ( 211 )    ysLDMWSLGCMFAgMIFrkepFFyGhdnhdQLvkIAkvLgTdgLnvYlnk
1HCK   ( 182 )    taVDIWsLGCIFAeMVtrralFpGdseidQLfrI-FrtLgtPdevvWpgV
1BLXA  ( 198 )    tpVDLWSVGCIFAeMfrrkpLFrGssdvdQLgkILdviglpgeedwprdv
1JNK   ( 242 )    eNVDIWSVGCIMGeMVrhkiLFpgrdyidQWnkVIeqlGtpcpeFmkkLq
3ERK   ( 205 )    ksIDIWsVGCILAeMLsnrpiFpG-khyldQLnhIlgiLGspsqedlncI
1BMKA  ( 202 )    qtVDIWSVGCIMAeLltGrtlFpGt---dhidQLklILrlVgTPgaeLlk
1KOBA  ( 229 )    fyTDMWaIGVLGYvLLsglsPFageddleTlqnVkrCd------------
1TKIA  ( 199 )    taTDMWSLGTLVYvLLSginPFlaetnqqiienImnae------------
1PHK   ( 208 )    keVDMWsTGVIMYtLLAGspPFwhrkqmlmlrmImsgn------------
1A06   ( 197 )    kaVDCWSIGVIAYILLcgypPFydendaklfeqIlkae------------
		    aaaaaaaaaaaaaaa         aaaaaaaaaa              

			   310       320       330       340       350 
1CDKA  ( 255 )    ------------------------------vrFpshFssdLkdLLrnLLq
1A6O   ( 261 )    yrieldpqlealVgrhsrkpWl----kfmnadNqhLVspeAidFLdkLLr
1HCK   ( 231 )    tsmpdykpsFpk--------wa----rqdfskvVppLdedGrsLLsqMLh
1BLXA  ( 248 )    alprqafhs-----------ks----aqpIekfVtdIdelGkdLLlkCLt
1JNK   ( 292 )    ptvrnyVenrpkyaGltfpkLFpdslFpadsehnklkAsqArdLLskMLv
3ERK   ( 254 )    inlkArnyLlslph------kn----kvpwnrlFpnAdskAldLLdkMLt
1BMKA  ( 249 )    kIssesarnyIqslaq----mp----kmnFanvFiganplAvdLLekMLv
1KOBA  ( 267 )    --------------------------wefdedaFssVspeAkdFIknLLq
1TKIA  ( 237 )    --------------------------ytfdeeaFkeisieAmdFVdrLLv
1PHK   ( 246 )    --------------------------yqfgspeWddysdtVkdLVsrFLv
1A06   ( 235 )    --------------------------yefdspyWddisdsAkdFIrhLMe
							aaaaaaaaaa  

			   360       370       380 
1CDKA  ( 275 )    vdltkRfGnlkdgvndIknHkWFattdwia
1A6O   ( 307 )    ydHqeRlt-----AleAmthpYFqqVra  
1HCK   ( 269 )    ydpnkRis-----AkaAlahpFFqdvt   
1BLXA  ( 283 )    fnpakRis-----AysAlshpYFq      
1JNK   ( 342 )    IdpakRis-----VddAlqHpYInvwydp 
3ERK   ( 294 )    fnphkRie-----veqALahpYLeqyydp 
1BMKA  ( 291 )    ldsdkRit-----AaqAlahaYFaqyhdpd
1KOBA  ( 291 )    keprkRlt-----VhdAlehpWLkgdh   
1TKIA  ( 261 )    kerksRmt-----AseAlqhpWLkqk    
1PHK   ( 270 )    vqpqkRyt-----AeeAlaHpFFqq     
1A06   ( 259 )    kdpekRft-----CeqAlqhpwIagd    
			       aaaaa            


Key to read JOY format
solvent inaccessible                    UPPER CASE      X
solvent accesible                       lower case      x
alpha helix                             red             x
beta strand                             blue            x
3 - 10 helix                            maroon          x
hydrogen bond to main chain amide       bold            x
hydrogen bond to mainchain carbonyl     underline       x
disulphide bond                         cedilla         ç
positive phi                            italic          x